PAVE (Program for Assembling and Viewing ESTs) Sitemap

 
The EST libraries for rice were created by Guo-liang Wang, and the EST libraries for M. oryza were created by Dan Ebbole. See Data Description for more information.

Basic Search: [ Help ]
ESTs Contigs
   Magnaporthe grisea:

   
(eg. mgcw003xG24.f)     (eg. Mg2_2015_01)
   Oryza sativa:

   
(eg. Rice: OSJNEb03G07.f)     (eg. Rice: Os2_00001_0416)

Advanced Search:    Magnaporthe grisea    Orysa sativa
The contigs can be filtered based on UniProt match, length of contig, number of ESTs, etc. Additionally, contigs can be filtered based on the expression levels of ESTs from specific libraries.
Browse contigs by EST library:
Magnaporthe grisea libraries
Library Stage Tissue Treatment # ESTs # Contigs # Singletons
mgap Appressorium 391 141 122
mgcm Complete Medium 2839 556 551
mgcs Conidiation 3153 622 566
mgcw Rice Cell Wall 3064 438 468
mgmk PMK1 germling 3281 705 853
mgmt Mating Culture 5671 786 1318
mgmy Minimal Medium 1217 356 236
mgns Nitrogen Starved 3853 654 628
mgsu BAYER mycelia 848 324 242

Oryza sativa libraries
Library Stage Tissue Treatment # ESTs # Contigs # Singletons
OSIIEa 3 week leaf Lesion Mimic SPL 11 8935 1632 315
OSIIEb 3 weeks leaf 24 hrs after innoculation with Rice Blast (PO6-6-3) 9487 2579 692
OSJNEa 3 weeks leaf 6 hrs after innoculation with Rice Blast (Che 86061) 5391 1877 386
OSJNEb 3 weeks leaf 24 hrs after innoculation with Rice Blast (Che 86061) 10509 2846 459
OSJNEc 3 weeks leaf 6 hrs after innoculation with Rice Blast (C9240-1) 7918 2316 270
OSJNEd 3 weeks leaf 24 hrs after inoculation with Rice Blast (C9240-1) 9095 2614 416
OSJNEe 3 weeks leaf 24 hrs after innoculation with Rice Blast (70-15) 9624 2854 513
OSJNEf 3 weeks leaf Uninfected Control 7961 2328 416

*Chatchawan Jantasuriyarat, Malali Gowda, Karl Haller, Jamie Hatfield, Guodong Lu, Eric Stahlberg, Bo Zhou, Huameng Li, HyRan Kim, Yeisoo Yu, Ralph A. Dean, Rod A. Wing, Carol Soderlund, and Guo-Liang Wang (2005). Large-Scale Identification of Expressed Sequence Tags Involved in Rice and Rice Blast Fungus Interaction. Plant Physiol. 138: 105-115. PDF
**Daniel J. Ebbole, Yuan Jin, Micheal Thon, Huaqin Pan, Eric Bhattari, Terry Thomas, and Ralph Dean (2004). Gene Discovery and Gene Expression in the Rice Blast Fungus, Magnaporthe grisea: Analysis of Expressed Sequence Tags. MPMI 17: 1337-1347. PDF