PAVE (Program for Assembling and Viewing ESTs)

Data Description Download Library Sequences

Search: [ Help ] 13_FEB_06.OS published rice* 13_FEB_06.MG published magnaporthe** ESTs: Contigs: (eg. Rice: OSJNEb03G07.f, MG mgcw003xG24.f) (eg. Rice: Os2_00001_0416, MG: Mg2_2015_01) Advanced Search [ Help ] 13_FEB_06.OS published rice* 13_FEB_06.MG published magnaporthe** This tool can be used to search for contigs containing ESTs from selected libraries. The advanced search can also be used to search for relative expressions of ESTs from specific libraries. With the advanced search tool you can filter results based inclusion of ESTs from selected libraries, UniProt matches, length of consensus, etc.. You can also apply different test statistics to identify differential expression of libraries within contigs. Browse contigs by EST library EST Libraries Library Treatment # ESTs # Contigs # Singletons OSIIEa Lesion Mimic SPL 11 8935 1974 315 OSIIEb 24 hrs after innoc. with (PO6-6-3) 9487 3211 692 OSJNEa 6 hrs after innoc. with (Che 86061) 5391 2240 386 OSJNEb 24 hrs after innoc. with (Che 86061) 10509 3339 459 OSJNEc 6 hrs after innoc. with (C9240-1) 7918 2710 270 OSJNEd 24 hrs after inoculation with (C9240-1) 9095 3078 416 OSJNEe 24 hrs after innoc. with (70-15) 9624 3429 513 OSJNEf Uninfected Control 7961 2847 416 Magnaporthe Grisea Libraries Library Stage Tissue # ESTs # Contigs # Singletons mgap Appressorium - 391 198 122 mgcm - Complete Medium 2823 767 551 mgcs Conidiation - 3086 856 566 mgcw - Rice Cell Wall 3067 595 468 mgmk - PMK1 germling 3108 1024 853 mgmt Mating Culture - 5585 1297 1318 mgmy - Minimal Medium 1195 453 236 mgns - Nitrogen Starved 3084 902 628 mgsu - BAYER mycelia 841 422 242 *Chatchawan Jantasuriyarat, Malali Gowda, Karl Haller, Jamie Hatfield, Guodong Lu, Eric Stahlberg, Bo Zhou, Huameng Li, HyRan Kim, Yeisoo Yu, Ralph A. Dean, Rod A. Wing, Carol Soderlund, and Guo-Liang Wang (2005). Large-Scale Identification of Expressed Sequence Tags Involved in Rice and Rice Blast Fungus Interaction. Plant Physiol. 138: 105-115. PDF **Daniel J. Ebbole, Yuan Jin, Micheal Thon, Huaqin Pan, Eric Bhattari, Terry Thomas, and Ralph Dean (2004). Gene Discovery and Gene Expression in the Rice Blast Fungus, Magnaporthe grisea: Analysis of Expressed Sequence Tags. MPMI 17: 1337-1347. PDF